SNP Report
Basic Infomation
| Name | rs2593633 dbSNP |
|---|---|
| Location | chr:2,61571513 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 85)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 0.87[CHB][hapmap];0.80[JPT][hapmap] |
| rs10186325 | 0.84[CEU][hapmap];0.90[TSI][hapmap] |
| rs10496092 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11125872 | 0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs11691734 | 0.88[CEU][hapmap];0.95[TSI][hapmap] |
| rs12053388 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12612982 | 0.88[CHD][hapmap];0.90[TSI][hapmap] |
| rs12615222 | 0.87[ASN][1000 genomes] |
| rs12617371 | 0.80[AFR][1000 genomes] |
| rs12620105 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12713437 | 0.83[GIH][hapmap];0.84[TSI][hapmap] |
| rs12713438 | 0.84[CEU][hapmap];0.80[CHD][hapmap];0.90[TSI][hapmap] |
| rs12997538 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13023037 | 0.81[EUR][1000 genomes] |
| rs1562308 | 0.84[CEU][hapmap];0.88[CHD][hapmap];0.88[TSI][hapmap] |
| rs1729658 | 0.86[GIH][hapmap];0.86[MEX][hapmap] |
| rs1729662 | 0.88[GIH][hapmap];0.87[MEX][hapmap] |
| rs1809028 | 0.86[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap] |
| rs1880866 | 0.88[CEU][hapmap] |
| rs1900572 | 0.92[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap] |
| rs2060824 | 0.90[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap] |
| rs2121660 | 0.92[CEU][hapmap];0.80[JPT][hapmap] |
| rs2123112 | 0.89[ASW][hapmap];0.93[LWK][hapmap] |
| rs2167566 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2290324 | 0.92[CHD][hapmap] |
| rs2305155 | 0.84[CEU][hapmap];0.88[CHD][hapmap];0.90[TSI][hapmap] |
| rs2305156 | 0.84[CEU][hapmap] |
| rs2421116 | 0.81[ASN][1000 genomes] |
| rs2421192 | 0.92[CEU][hapmap];0.81[JPT][hapmap] |
| rs2421203 | 0.92[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap] |
| rs2442025 | 0.86[AFR][1000 genomes] |
| rs2442034 | 0.83[EUR][1000 genomes] |
| rs2463102 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2592352 | 0.91[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap];0.92[TSI][hapmap] |
| rs2600665 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap] |
| rs2694617 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2694625 | 0.92[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs2694642 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2950268 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs34668697 | 0.85[AFR][1000 genomes] |
| rs35085112 | 0.82[EUR][1000 genomes] |
| rs3732171 | 0.88[CHD][hapmap];0.90[TSI][hapmap] |
| rs3771260 | 0.84[CEU][hapmap] |
| rs3771261 | 0.84[CEU][hapmap];0.88[CHD][hapmap];0.90[TSI][hapmap] |
| rs3821222 | 0.87[CEU][hapmap];0.90[TSI][hapmap] |
| rs4430924 | 0.88[CEU][hapmap];0.95[TSI][hapmap] |
| rs4671401 | 0.85[JPT][hapmap] |
| rs4671402 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap] |
| rs4672424 | 0.89[YRI][hapmap] |
| rs4672429 | 0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4672431 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62152270 | 0.87[ASN][1000 genomes] |
| rs6545847 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap] |
| rs6545867 | 0.92[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap] |
| rs6545871 | 0.92[CEU][hapmap] |
| rs6545873 | 0.85[CHD][hapmap];0.90[TSI][hapmap] |
| rs6705235 | 0.87[CEU][hapmap] |
| rs6706786 | 0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap] |
| rs6709441 | 0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs6718887 | 0.82[CEU][hapmap] |
| rs6737373 | 0.81[LWK][hapmap] |
| rs6738482 | 0.87[ASN][1000 genomes] |
| rs6739427 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs6749226 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7421663 | 0.84[CEU][hapmap] |
| rs7563678 | 0.85[CHD][hapmap];0.90[TSI][hapmap] |
| rs7566035 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7570707 | 0.89[CHB][hapmap];0.84[JPT][hapmap] |
| rs7578139 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs766447 | 0.84[CEU][hapmap];0.85[CHD][hapmap];0.90[TSI][hapmap] |
| rs777585 | 0.83[CEU][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap] |
| rs777587 | 0.91[LWK][hapmap];0.80[YRI][hapmap] |
| rs777588 | 0.86[YRI][hapmap] |
| rs777589 | 0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap] |
| rs777590 | 0.87[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap] |
| rs777591 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap] |
| rs777593 | 0.87[CEU][hapmap];0.86[CHB][hapmap] |
| rs778143 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs778144 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs778152 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs778153 | 0.80[YRI][hapmap] |
| rs778154 | 0.92[CEU][hapmap];0.81[JPT][hapmap] |
| rs778155 | 0.92[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap] |
| rs811372 | 0.90[CHB][hapmap];0.85[JPT][hapmap] |
| rs811871 | 0.80[YRI][hapmap];0.83[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014