SNP Report
Name | rs1729662   dbSNP |
---|---|
Location | chr:2,61391305 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10496092 | 0.91[GIH][hapmap];0.86[MEX][hapmap] |
rs11125871 | 0.80[ASN][1000 genomes] |
rs1177274 | 1.00[CEU][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1177289 | 0.83[MKK][hapmap] |
rs12620105 | 0.86[YRI][hapmap] |
rs12998475 | 0.83[AMR][1000 genomes] |
rs1621048 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1665269 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1729658 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2049747 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2060824 | 0.82[CHB][hapmap] |
rs2167566 | 0.89[GIH][hapmap] |
rs2290324 | 0.83[CHD][hapmap] |
rs2593633 | 0.88[GIH][hapmap];0.87[MEX][hapmap] |
rs2600665 | 0.81[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap] |
rs2698197 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6739427 | 0.81[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap] |
rs7566035 | 0.83[YRI][hapmap] |
rs777585 | 0.81[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap] |
rs777588 | 0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs777589 | 0.91[GIH][hapmap];0.87[MEX][hapmap] |
rs777591 | 0.91[GIH][hapmap];0.87[MEX][hapmap] |
rs778143 | 0.88[GIH][hapmap];0.91[MEX][hapmap] |
rs778144 | 0.91[GIH][hapmap];0.91[MEX][hapmap] |
rs811372 | 0.82[CHB][hapmap] |
Symbol | Regulation type |
---|---|
AHSA2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014