SNP Report
Basic Infomation
| Name | rs10496092 dbSNP |
|---|---|
| Location | chr:2,61524679 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 65)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 0.94[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs11125871 | 0.83[AMR][1000 genomes] |
| rs11125872 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs11691734 | 0.92[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap] |
| rs1177274 | 0.88[GIH][hapmap];0.82[MEX][hapmap] |
| rs12053388 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12615222 | 0.98[ASN][1000 genomes] |
| rs12620105 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12713437 | 0.86[GIH][hapmap] |
| rs12997538 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1621048 | 0.88[GIH][hapmap];0.86[MEX][hapmap] |
| rs1729658 | 0.86[ASW][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.87[MKK][hapmap] |
| rs1729662 | 0.91[GIH][hapmap];0.86[MEX][hapmap] |
| rs1809028 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1880866 | 0.92[CEU][hapmap] |
| rs1900572 | 0.92[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap] |
| rs2060824 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2121660 | 0.92[CEU][hapmap] |
| rs2167566 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2290324 | 0.81[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2421116 | 0.91[ASN][1000 genomes] |
| rs2421192 | 0.92[CEU][hapmap] |
| rs2421203 | 0.92[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap] |
| rs2463102 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2592352 | 0.91[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap] |
| rs2593633 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2600665 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes] |
| rs2694617 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2694625 | 0.92[CEU][hapmap] |
| rs2694642 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs28480287 | 0.87[ASN][1000 genomes] |
| rs3821222 | 0.87[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap] |
| rs4430924 | 0.86[ASW][hapmap];0.92[CEU][hapmap];0.82[GIH][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap] |
| rs4671401 | 0.90[JPT][hapmap] |
| rs4671402 | 0.90[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4672423 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4672425 | 0.80[ASN][1000 genomes] |
| rs4672429 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4672431 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62152270 | 0.97[ASN][1000 genomes] |
| rs6545845 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6545847 | 0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6545867 | 0.91[CEU][hapmap] |
| rs6545871 | 0.91[CEU][hapmap] |
| rs6705235 | 0.87[CEU][hapmap] |
| rs6706786 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6709441 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6734628 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6738482 | 0.98[ASN][1000 genomes] |
| rs6739427 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6749226 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7566035 | 0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7570707 | 0.95[CHB][hapmap];0.89[JPT][hapmap] |
| rs7578139 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs777585 | 0.83[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs777589 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs777590 | 0.87[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs777591 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[ASN][1000 genomes] |
| rs777593 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs778143 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs778144 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs778152 | 1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs778154 | 0.92[CEU][hapmap] |
| rs778155 | 0.87[ASW][hapmap];0.92[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap] |
| rs811372 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014