SNP Report

Basic Infomation

Name	rs2060824 dbSNP
Location	chr:2,61484556
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10496092	0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11125872	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12053388	0.81[ASN][1000 genomes]
rs12615222	0.84[ASN][1000 genomes]
rs12620105	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1729662	0.82[CHB][hapmap]
rs1809028	0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1900572	0.81[CHD][hapmap]
rs2167566	1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2290324	0.86[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2421116	0.89[ASN][1000 genomes]
rs2421203	0.83[CHD][hapmap]
rs2463102	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2593633	0.90[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs2600665	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2694617	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2694642	0.90[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs2698197	0.81[CHB][hapmap]
rs3087777	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4671401	0.90[JPT][hapmap]
rs4671402	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4672429	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4672431	0.81[ASN][1000 genomes]
rs62152270	0.83[ASN][1000 genomes]
rs6545845	0.81[ASN][1000 genomes]
rs6545847	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6706786	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6709441	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6734628	0.81[ASN][1000 genomes]
rs6738482	0.84[ASN][1000 genomes]
rs6739427	0.90[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6749226	0.80[ASN][1000 genomes]
rs7566035	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7570707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7578139	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs777585	0.90[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs777589	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs777590	0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs777591	0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs777593	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs778143	0.85[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs778144	0.85[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs778152	0.84[JPT][hapmap]
rs778155	0.83[CHD][hapmap]
rs811372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
LOC339803	Pritchard
BCL11A	SCAN
LOC339803	SCAN