SNP Report
Name | rs811372   dbSNP |
---|---|
Location | chr:2,61429568 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10178135 | 1.00[CHB][hapmap] |
rs10496092 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
rs11125872 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12620105 | 0.90[CHB][hapmap];0.86[JPT][hapmap] |
rs1729662 | 0.82[CHB][hapmap] |
rs1809028 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2060824 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2167566 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs2290324 | 0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2421116 | 0.81[ASN][1000 genomes] |
rs2463102 | 0.90[CHB][hapmap];0.81[JPT][hapmap] |
rs2593633 | 0.90[CHB][hapmap];0.85[JPT][hapmap] |
rs2600665 | 0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes] |
rs2694617 | 0.90[CHB][hapmap];0.85[JPT][hapmap] |
rs2694642 | 0.90[CHB][hapmap];0.90[JPT][hapmap] |
rs2698197 | 0.82[CHB][hapmap] |
rs3087777 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4671401 | 0.85[JPT][hapmap] |
rs4671402 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4672423 | 0.83[ASN][1000 genomes] |
rs4672425 | 0.81[ASN][1000 genomes] |
rs4672429 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
rs6545845 | 0.85[ASN][1000 genomes] |
rs6545847 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
rs6706786 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6709441 | 0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
rs6734628 | 0.85[ASN][1000 genomes] |
rs6739427 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
rs7566035 | 1.00[CHB][hapmap];0.84[JPT][hapmap] |
rs7570707 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7578139 | 0.90[CHB][hapmap];0.81[JPT][hapmap] |
rs777585 | 0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes] |
rs777589 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes] |
rs777590 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
rs777591 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
rs777593 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes] |
rs778143 | 0.85[CHB][hapmap];0.85[JPT][hapmap] |
rs778144 | 0.85[CHB][hapmap];0.85[JPT][hapmap] |
rs778152 | 0.81[CHB][hapmap] |
Symbol | Regulation type |
---|---|
USP34 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
LOC339803 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014