SNP Report
Basic Infomation
| Name | rs2600665 dbSNP |
|---|---|
| Location | chr:2,61405795 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 50)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 0.94[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs10496092 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes] |
| rs11125872 | 0.95[CHB][hapmap];0.85[JPT][hapmap] |
| rs1177274 | 0.88[GIH][hapmap];0.87[MEX][hapmap] |
| rs12053388 | 0.85[ASN][1000 genomes] |
| rs12615222 | 0.86[ASN][1000 genomes] |
| rs12620105 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs12998475 | 0.84[AMR][1000 genomes] |
| rs1621048 | 0.88[GIH][hapmap];0.91[MEX][hapmap];0.81[YRI][hapmap] |
| rs1729658 | 0.88[GIH][hapmap];0.91[MEX][hapmap];0.81[YRI][hapmap] |
| rs1729662 | 0.81[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap] |
| rs1809028 | 0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs2060824 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2167566 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs2290324 | 0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2421116 | 0.93[ASN][1000 genomes] |
| rs2463102 | 0.87[CEU][hapmap];0.86[CHB][hapmap] |
| rs2593633 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap] |
| rs2694617 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap] |
| rs2694642 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap] |
| rs2698197 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
| rs28480287 | 0.81[ASN][1000 genomes] |
| rs3087777 | 0.87[ASN][1000 genomes] |
| rs4671401 | 0.85[JPT][hapmap];0.91[YRI][hapmap] |
| rs4671402 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap] |
| rs4672423 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4672425 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4672429 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs4672431 | 0.85[ASN][1000 genomes] |
| rs62152270 | 0.87[ASN][1000 genomes] |
| rs6545845 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6545847 | 0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6706786 | 0.95[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6709441 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6734628 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6738482 | 0.86[ASN][1000 genomes] |
| rs6739427 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6749226 | 0.84[ASN][1000 genomes] |
| rs7566035 | 0.85[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7570707 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7578139 | 0.87[CEU][hapmap];0.86[CHB][hapmap] |
| rs777585 | 0.88[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs777588 | 0.84[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs777589 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs777590 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs777591 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs777593 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs778143 | 0.87[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap] |
| rs778144 | 0.87[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap] |
| rs811372 | 0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Proximal transcriptional regulation |
| KIAA1841 | Distal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
| PPP3R1 | Distal transcriptional regulation |
| HNRNPH1 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
| ENSG00000228414 | Distal transcriptional regulation |
| C2orf74 | Distal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
| AHSA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014