SNP Report

Basic Infomation

Name	rs777588 dbSNP
Location	chr:2,61426820
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11125871	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1177274	0.88[CEU][hapmap]
rs11893880	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12620105	0.81[JPT][hapmap]
rs12998475	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1621048	0.84[CEU][hapmap]
rs1729658	0.88[CEU][hapmap]
rs1729662	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1809028	0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2167566	0.85[JPT][hapmap];0.93[YRI][hapmap]
rs2290324	0.95[JPT][hapmap]
rs2463102	0.87[YRI][hapmap]
rs2593633	0.86[YRI][hapmap]
rs2600665	0.84[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs2694617	0.80[JPT][hapmap];0.93[YRI][hapmap]
rs2698197	0.89[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4671401	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4671402	0.82[CHB][hapmap]
rs4672423	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4672424	0.97[YRI][hapmap];0.81[AFR][1000 genomes]
rs4672425	0.83[AMR][1000 genomes]
rs4672429	0.85[JPT][hapmap]
rs6545845	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6545847	0.90[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6709441	0.86[JPT][hapmap];0.87[AMR][1000 genomes]
rs6734628	0.86[AMR][1000 genomes]
rs6739427	0.85[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7570707	0.80[JPT][hapmap]
rs7578139	0.93[YRI][hapmap]
rs777585	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs777587	0.80[YRI][hapmap]
rs777589	0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs777590	0.85[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs777591	0.84[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs777593	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs778144	0.96[YRI][hapmap]
rs778152	0.93[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
LOC339803	Pritchard
C2orf74	GTEx