SNP Report
Basic Infomation
| Name | rs1729658 dbSNP |
|---|---|
| Location | chr:2,61373520 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496092 | 0.86[ASW][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.87[MKK][hapmap] |
| rs1177274 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12620105 | 0.90[YRI][hapmap] |
| rs1621048 | 0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1665269 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1729662 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2049747 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2167566 | 0.86[GIH][hapmap] |
| rs2593633 | 0.86[GIH][hapmap];0.86[MEX][hapmap] |
| rs2600665 | 0.88[GIH][hapmap];0.91[MEX][hapmap];0.81[YRI][hapmap] |
| rs2698197 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6739427 | 0.86[GIH][hapmap];0.81[MEX][hapmap] |
| rs7566035 | 0.88[YRI][hapmap] |
| rs777585 | 0.88[GIH][hapmap];0.91[MEX][hapmap] |
| rs777588 | 0.88[CEU][hapmap] |
| rs777589 | 0.88[GIH][hapmap];0.86[MEX][hapmap] |
| rs777591 | 0.88[GIH][hapmap];0.86[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000212978 | Proximal transcriptional regulation |
| KIAA1841 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014