SNP Report
Basic Infomation
| Name | rs6739427 dbSNP |
|---|---|
| Location | chr:2,61452879 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 60)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 0.88[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs10496092 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11125871 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11125872 | 0.91[CHB][hapmap];0.85[JPT][hapmap] |
| rs1177274 | 0.86[GIH][hapmap];0.87[MEX][hapmap] |
| rs11893880 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12053388 | 0.83[ASN][1000 genomes] |
| rs12615222 | 0.84[ASN][1000 genomes] |
| rs12620105 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12998475 | 0.86[AMR][1000 genomes] |
| rs1621048 | 0.85[GIH][hapmap];0.82[MEX][hapmap] |
| rs1729658 | 0.86[GIH][hapmap];0.81[MEX][hapmap] |
| rs1729662 | 0.81[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap] |
| rs1809028 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1900572 | 0.94[ASW][hapmap];0.88[CEU][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.97[MKK][hapmap];0.80[TSI][hapmap];0.89[YRI][hapmap] |
| rs2060824 | 0.90[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2167566 | 0.82[ASW][hapmap];0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2290324 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs2421116 | 0.81[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2421192 | 0.88[CEU][hapmap];0.80[JPT][hapmap] |
| rs2463102 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap] |
| rs2593633 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap] |
| rs2600665 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2600668 | 0.80[YRI][hapmap] |
| rs2694617 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap] |
| rs2694625 | 0.88[CEU][hapmap];0.80[JPT][hapmap] |
| rs2694642 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
| rs3087777 | 0.87[ASN][1000 genomes] |
| rs4671401 | 0.85[JPT][hapmap] |
| rs4671402 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap] |
| rs4672423 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4672424 | 0.93[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs4672425 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4672429 | 0.91[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4672431 | 0.83[ASN][1000 genomes] |
| rs62152270 | 0.85[ASN][1000 genomes] |
| rs6545845 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6545847 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6545867 | 0.87[CEU][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap] |
| rs6706786 | 0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6709441 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6734628 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6738482 | 0.81[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6749226 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7566035 | 0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7570707 | 0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs7578139 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap] |
| rs777585 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs777588 | 0.85[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs777589 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs777590 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs777591 | 0.89[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs777593 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs778143 | 0.95[CEU][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap] |
| rs778144 | 0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap] |
| rs778152 | 0.96[CEU][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap] |
| rs778154 | 0.88[CEU][hapmap];0.80[JPT][hapmap] |
| rs778155 | 0.88[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.80[TSI][hapmap] |
| rs811372 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs935860 | 0.80[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014