SNP Report

Basic Infomation

Name	rs7578139 dbSNP
Location	chr:2,61564121
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 67)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	0.88[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10186325	0.84[CEU][hapmap]
rs10496092	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11125872	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11691734	0.88[CEU][hapmap]
rs12053388	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12615222	0.87[ASN][1000 genomes]
rs12620105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12713438	0.84[CEU][hapmap]
rs12997538	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1809028	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1880866	0.89[CEU][hapmap]
rs1900572	0.92[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs2060824	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2121660	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs2167566	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305155	0.84[CEU][hapmap]
rs2305156	0.85[CEU][hapmap]
rs2421116	0.82[ASN][1000 genomes]
rs2421192	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs2421203	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs2442034	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2463102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2592352	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs2593633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2600665	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs2694617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2694625	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs2694642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2950268	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3771260	0.85[CEU][hapmap]
rs3771261	0.84[CEU][hapmap]
rs3821222	0.87[CEU][hapmap]
rs4430924	0.88[CEU][hapmap]
rs4671401	0.86[JPT][hapmap]
rs4671402	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4672424	0.90[YRI][hapmap]
rs4672429	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4672431	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62152270	0.88[ASN][1000 genomes]
rs6545847	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.81[AFR][1000 genomes]
rs6545867	0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs6545871	0.92[CEU][hapmap]
rs6705235	0.88[CEU][hapmap]
rs6706786	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6709441	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6718887	0.83[CEU][hapmap]
rs6738482	0.87[ASN][1000 genomes]
rs6739427	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs6749226	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7421663	0.85[CEU][hapmap]
rs7566035	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7570707	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7606167	0.81[CEU][hapmap]
rs766447	0.84[CEU][hapmap]
rs777585	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs777588	0.93[YRI][hapmap]
rs777589	0.96[CEU][hapmap];0.90[CHB][hapmap];0.89[YRI][hapmap]
rs777590	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap]
rs777591	0.87[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs777593	0.88[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs778143	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778144	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs778152	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778154	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs778155	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs811372	0.90[CHB][hapmap];0.81[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)