SNP Report

Basic Infomation

Name	rs10178135 dbSNP
Location	chr:2,61485267
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10496092	0.94[CHB][hapmap];0.90[ASN][1000 genomes]
rs11125872	1.00[CHB][hapmap]
rs12053388	0.90[ASN][1000 genomes]
rs12615222	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12620105	0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1809028	0.87[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2060824	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2167566	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2290324	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2421116	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2463102	0.88[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2593633	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs2600665	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs2694617	0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2694642	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs28480287	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3087777	0.81[ASN][1000 genomes]
rs4671401	0.88[AMR][1000 genomes]
rs4671402	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs4672423	0.87[ASN][1000 genomes]
rs4672425	0.84[ASN][1000 genomes]
rs4672429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4672431	0.90[ASN][1000 genomes]
rs62152270	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6545845	0.89[ASN][1000 genomes]
rs6545847	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs6706786	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6709441	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs6734628	0.89[ASN][1000 genomes]
rs6738482	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6739427	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs6749226	0.88[ASN][1000 genomes]
rs7566035	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7570707	1.00[CHB][hapmap]
rs7578139	0.88[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs777585	0.83[CHB][hapmap];0.91[ASN][1000 genomes]
rs777589	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs777590	0.89[CHB][hapmap];0.90[ASN][1000 genomes]
rs777591	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs777593	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs778143	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs778144	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs778152	0.86[JPT][hapmap]
rs811372	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)