SNP Report

Basic Infomation

Name	rs777593 dbSNP
Location	chr:2,61419103
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs10496092	0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11125871	0.82[AMR][1000 genomes]
rs11125872	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11893880	0.81[AMR][1000 genomes]
rs12053388	0.85[ASN][1000 genomes]
rs12615222	0.86[ASN][1000 genomes]
rs12620105	0.88[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12998475	0.89[AMR][1000 genomes]
rs1809028	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2060824	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2167566	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2290324	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2421116	0.93[ASN][1000 genomes]
rs2463102	0.88[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs2593633	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs2600665	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694617	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2694625	0.81[CEU][hapmap]
rs2694642	0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2698197	0.85[JPT][hapmap]
rs28480287	0.81[ASN][1000 genomes]
rs3087777	0.88[ASN][1000 genomes]
rs4671401	0.85[JPT][hapmap]
rs4671402	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4672423	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4672425	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4672429	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4672431	0.85[ASN][1000 genomes]
rs62152270	0.87[ASN][1000 genomes]
rs6545845	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6545847	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6706786	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6709441	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6734628	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6738482	0.86[ASN][1000 genomes]
rs6739427	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6749226	0.84[ASN][1000 genomes]
rs7566035	0.86[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7570707	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7578139	0.88[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs777585	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs777588	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs777589	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs777590	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs777591	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778143	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs778144	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs778152	0.88[CEU][hapmap]
rs811372	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation
AHSA2	Distal transcriptional regulation
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
LOC339803	Pritchard
	GTEx
C2orf74	GTEx