SNP Report
Basic Infomation
| Name | rs3087777 dbSNP |
|---|---|
| Location | chr:2,61454059 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 0.81[ASN][1000 genomes] |
| rs11125872 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1809028 | 0.89[ASN][1000 genomes] |
| rs2060824 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2290324 | 0.88[ASN][1000 genomes] |
| rs2421116 | 0.83[ASN][1000 genomes] |
| rs2600665 | 0.87[ASN][1000 genomes] |
| rs4671402 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4672423 | 0.84[ASN][1000 genomes] |
| rs4672425 | 0.84[ASN][1000 genomes] |
| rs6545845 | 0.88[ASN][1000 genomes] |
| rs6545847 | 0.87[ASN][1000 genomes] |
| rs6706786 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6709441 | 0.88[ASN][1000 genomes] |
| rs6734628 | 0.88[ASN][1000 genomes] |
| rs6739427 | 0.87[ASN][1000 genomes] |
| rs7570707 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs777585 | 0.87[ASN][1000 genomes] |
| rs777589 | 0.87[ASN][1000 genomes] |
| rs777590 | 0.86[ASN][1000 genomes] |
| rs777591 | 0.87[ASN][1000 genomes] |
| rs777593 | 0.88[ASN][1000 genomes] |
| rs811372 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014