SNP Report

Basic Infomation

Name	rs1809028 dbSNP
Location	chr:2,61413723
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	0.87[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10496092	0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11125872	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1177279	1.00[ASW][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap]
rs1177287	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap]
rs12053388	0.86[ASN][1000 genomes]
rs12615222	0.87[ASN][1000 genomes]
rs12620105	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2060824	0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2167566	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2290324	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2421116	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2463102	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2593633	0.86[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs2600665	0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2694617	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2694642	0.86[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs28480287	0.81[ASN][1000 genomes]
rs3087777	0.89[ASN][1000 genomes]
rs4671400	1.00[ASW][hapmap]
rs4671401	0.90[JPT][hapmap]
rs4671402	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs4672423	0.94[ASN][1000 genomes]
rs4672425	0.89[ASN][1000 genomes]
rs4672429	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4672431	0.86[ASN][1000 genomes]
rs62152270	0.87[ASN][1000 genomes]
rs6545845	0.96[ASN][1000 genomes]
rs6545847	0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6706786	0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6709441	0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs6734628	0.96[ASN][1000 genomes]
rs6738482	0.87[ASN][1000 genomes]
rs6739427	0.95[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs6749226	0.85[ASN][1000 genomes]
rs7566035	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7570707	0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs7578139	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs777585	0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs777588	0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs777589	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs777590	0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs777591	0.90[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs777593	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs778143	0.81[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs778144	0.81[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs778152	0.82[JPT][hapmap]
rs811372	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
AHSA2	Distal transcriptional regulation
USP34	Distal transcriptional regulation
AHSA2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
AHSA2	seeQTL
ENSG00000173209	Pritchard
AHSA2	Pritchard
MDH1	SCAN
AFTPH	SCAN
LOC339803	SCAN
LOC339803	SCAN