SNP Report
Basic Infomation
| Name | rs1177287 dbSNP |
|---|---|
| Location | chr:2,61352163 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177264 | 0.84[CHD][hapmap] |
| rs1177265 | 0.84[CHD][hapmap] |
| rs1177266 | 0.84[CHD][hapmap] |
| rs1177279 | 1.00[ASW][hapmap];0.81[CHD][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.83[AFR][1000 genomes] |
| rs1177282 | 0.81[JPT][hapmap] |
| rs1177283 | 0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1177284 | 0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1177285 | 0.81[JPT][hapmap] |
| rs1177288 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1177289 | 0.86[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1177292 | 0.94[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1177293 | 0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1177296 | 0.83[AFR][1000 genomes] |
| rs1177308 | 0.80[JPT][hapmap] |
| rs1177309 | 0.80[JPT][hapmap] |
| rs1429265 | 1.00[ASW][hapmap] |
| rs1615070 | 0.80[JPT][hapmap] |
| rs1665263 | 0.83[JPT][hapmap] |
| rs1665278 | 0.80[CHD][hapmap] |
| rs1729657 | 0.81[CHD][hapmap] |
| rs1729660 | 0.81[JPT][hapmap] |
| rs1729674 | 0.80[JPT][hapmap] |
| rs1809028 | 1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap] |
| rs4671400 | 1.00[ASW][hapmap] |
| rs7558954 | 0.80[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014