SNP Report
Basic Infomation
| Name | rs1177289 dbSNP |
|---|---|
| Location | chr:2,61353256 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177264 | 0.82[TSI][hapmap] |
| rs1177265 | 0.84[TSI][hapmap] |
| rs1177266 | 0.82[TSI][hapmap] |
| rs1177283 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1177284 | 0.89[CHB][hapmap];0.94[JPT][hapmap] |
| rs1177286 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1177287 | 0.86[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1177288 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1177290 | 0.82[TSI][hapmap] |
| rs1177293 | 0.89[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1621048 | 0.81[MKK][hapmap] |
| rs1665263 | 0.81[JPT][hapmap] |
| rs1665278 | 0.84[TSI][hapmap] |
| rs1729662 | 0.83[MKK][hapmap] |
| rs71403390 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014