SNP Report
Basic Infomation
| Name | rs1177293 dbSNP |
|---|---|
| Location | chr:2,61348080 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177261 | 0.86[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs1177263 | 0.87[EUR][1000 genomes] |
| rs1177264 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes] |
| rs1177265 | 0.85[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1177266 | 0.85[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs1177283 | 0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1177284 | 0.81[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1177286 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1177287 | 0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1177288 | 0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1177289 | 0.89[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1177290 | 0.85[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1177300 | 0.80[EUR][1000 genomes] |
| rs1624206 | 0.89[EUR][1000 genomes] |
| rs1624236 | 0.89[EUR][1000 genomes] |
| rs1665257 | 0.81[EUR][1000 genomes] |
| rs1665278 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs1665279 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| LOC339804 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014