SNP Report
Basic Infomation
| Name | rs1177264 dbSNP |
|---|---|
| Location | chr:2,61340450 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177233 | 0.90[GIH][hapmap];0.83[MEX][hapmap] |
| rs1177234 | 0.87[GIH][hapmap];0.87[MEX][hapmap] |
| rs1177261 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1177263 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1177265 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1177266 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1177279 | 0.90[CHD][hapmap];0.90[JPT][hapmap] |
| rs1177280 | 0.81[ASN][1000 genomes] |
| rs1177283 | 0.89[MKK][hapmap];0.82[TSI][hapmap] |
| rs1177286 | 1.00[YRI][hapmap] |
| rs1177287 | 0.84[CHD][hapmap] |
| rs1177288 | 0.89[MKK][hapmap];0.82[TSI][hapmap] |
| rs1177289 | 0.82[TSI][hapmap] |
| rs1177290 | 1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177293 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes] |
| rs1177294 | 0.80[ASN][1000 genomes] |
| rs1177295 | 0.80[CEU][hapmap] |
| rs1177298 | 0.80[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.80[ASN][1000 genomes] |
| rs1177299 | 0.84[ASW][hapmap] |
| rs1177300 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1186180 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1624206 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1624236 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1626783 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1627608 | 0.81[EUR][1000 genomes] |
| rs1665257 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1665278 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1665279 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1729657 | 0.80[CEU][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2441463 | 0.82[EUR][1000 genomes] |
| rs2441464 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2564097 | 0.81[CHD][hapmap];0.85[GIH][hapmap] |
| rs2564117 | 0.87[GIH][hapmap];0.87[MEX][hapmap] |
| rs2564118 | 0.87[GIH][hapmap];0.87[MEX][hapmap] |
| rs3108630 | 0.87[GIH][hapmap] |
| rs57287858 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014