SNP Report

Basic Infomation

Name	rs2564097 dbSNP
Location	chr:2,61278052
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10197306	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11125863	0.84[ASN][1000 genomes]
rs1177228	0.88[ASN][1000 genomes]
rs1177231	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1177233	0.84[ASW][hapmap];0.84[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1177234	0.88[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1177264	0.81[CHD][hapmap];0.85[GIH][hapmap]
rs1177265	0.81[CHD][hapmap];0.85[GIH][hapmap]
rs1177266	0.82[CHD][hapmap];0.85[GIH][hapmap]
rs1177279	0.91[CHD][hapmap]
rs1177290	0.88[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs1177295	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs1177298	0.84[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1182688	0.81[JPT][hapmap]
rs1186180	0.89[EUR][1000 genomes]
rs13406000	0.83[EUR][1000 genomes]
rs1665278	0.80[CHD][hapmap]
rs1729657	0.84[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2441464	0.89[EUR][1000 genomes]
rs2564117	0.84[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2564118	0.84[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2698196	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3108630	0.84[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3732178	0.82[JPT][hapmap]
rs57287858	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

rSNP related genes

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)