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rVarBase
SNP Report
Basic Infomation
Name
rs3732178  
dbSNP
Location
chr:2,61273201
Allele
G/T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1177234
0.81[JPT][hapmap]
rs1182688
0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2564097
0.82[JPT][hapmap]
rs3108630
0.81[JPT][hapmap]
rs35156445
1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
PEX13
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
LOC339803
SCAN
LOC100129522
SCAN
STK32B
SCAN
SEMA7A
SCAN