SNP Report

Basic Infomation

Name	rs3108630 dbSNP
Location	chr:2,61268160
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10197306	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1177231	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1177233	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1177234	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1177264	0.87[GIH][hapmap]
rs1177265	0.87[GIH][hapmap]
rs1177266	0.87[GIH][hapmap]
rs1177290	0.82[CHD][hapmap];0.87[GIH][hapmap]
rs1177298	0.97[GIH][hapmap];0.88[TSI][hapmap]
rs1182688	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs12988616	0.88[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap]
rs1729657	0.97[GIH][hapmap];0.91[TSI][hapmap]
rs2564097	0.84[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2564117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2564118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2698196	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3732178	0.81[JPT][hapmap]
rs6760104	0.93[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
PEX13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 16)

eQTL related gene	Source
DTD1	SCAN
C2orf74	seeQTL
LOC339804	Pritchard
AHSA2	Pritchard
LOC339804	Pritchard
AHSA2	SCAN
PUS10	SCAN
KIAA1841	SCAN
AHSA2	SCAN
PUS10	SCAN
LOC339803	SCAN
SNORA70B	SCAN
C2orf74	SCAN
C2orf74	SCAN
LOC339803	SCAN
C2orf74	GTEx