SNP Report
Name | rs3108630   dbSNP |
---|---|
Location | chr:2,61268160 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10197306 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1177231 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1177233 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1177234 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1177264 | 0.87[GIH][hapmap] |
rs1177265 | 0.87[GIH][hapmap] |
rs1177266 | 0.87[GIH][hapmap] |
rs1177290 | 0.82[CHD][hapmap];0.87[GIH][hapmap] |
rs1177298 | 0.97[GIH][hapmap];0.88[TSI][hapmap] |
rs1182688 | 0.81[CHD][hapmap];0.81[JPT][hapmap] |
rs12988616 | 0.88[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap] |
rs1729657 | 0.97[GIH][hapmap];0.91[TSI][hapmap] |
rs2564097 | 0.84[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2564117 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2564118 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2698196 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3732178 | 0.81[JPT][hapmap] |
rs6760104 | 0.93[YRI][hapmap] |
Symbol | Regulation type |
---|---|
PEX13 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014