SNP Report
Basic Infomation
| Name | rs1729657 dbSNP |
|---|---|
| Location | chr:2,61304002 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177233 | 0.82[ASW][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap] |
| rs1177234 | 0.80[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap] |
| rs1177261 | 0.81[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177263 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177264 | 0.80[CEU][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1177265 | 0.81[CEU][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1177266 | 0.81[CEU][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1177279 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1177280 | 0.98[ASN][1000 genomes] |
| rs1177287 | 0.81[CHD][hapmap] |
| rs1177290 | 0.81[CEU][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap] |
| rs1177294 | 0.97[ASN][1000 genomes] |
| rs1177295 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177296 | 0.95[ASN][1000 genomes] |
| rs1177298 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1177299 | 0.82[ASW][hapmap] |
| rs1186180 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13406000 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1665278 | 0.81[CEU][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap] |
| rs1665279 | 0.80[EUR][1000 genomes] |
| rs2441464 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2441465 | 0.81[ASN][1000 genomes] |
| rs2564097 | 0.84[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2564117 | 0.97[GIH][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap] |
| rs2564118 | 0.97[GIH][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap] |
| rs3108630 | 0.97[GIH][hapmap];0.91[TSI][hapmap] |
| rs57287858 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014