SNP Report
Basic Infomation
| Name | rs1177279 dbSNP |
|---|---|
| Location | chr:2,61295122 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177228 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1177233 | 0.81[CHD][hapmap] |
| rs1177261 | 0.85[JPT][hapmap] |
| rs1177264 | 0.90[CHD][hapmap];0.90[JPT][hapmap] |
| rs1177265 | 0.91[CHD][hapmap];0.90[JPT][hapmap] |
| rs1177266 | 0.91[CHD][hapmap];0.90[JPT][hapmap] |
| rs1177280 | 1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1177284 | 0.83[AFR][1000 genomes] |
| rs1177287 | 1.00[ASW][hapmap];0.81[CHD][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.83[AFR][1000 genomes] |
| rs1177290 | 0.81[CHD][hapmap] |
| rs1177294 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1177295 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1177296 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1177298 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1186180 | 0.88[ASN][1000 genomes] |
| rs13406000 | 0.89[ASN][1000 genomes] |
| rs1429265 | 1.00[ASW][hapmap] |
| rs1665278 | 0.88[CHD][hapmap];0.90[JPT][hapmap] |
| rs1729657 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1809028 | 1.00[ASW][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap] |
| rs2441464 | 0.92[ASN][1000 genomes] |
| rs2564097 | 0.91[CHD][hapmap] |
| rs2564117 | 0.81[CHD][hapmap] |
| rs2564118 | 0.81[CHD][hapmap] |
| rs4671400 | 1.00[ASW][hapmap] |
| rs57287858 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014