SNP Report
Basic Infomation
| Name | rs1665278 dbSNP |
|---|---|
| Location | chr:2,61341845 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177261 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1177263 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1177264 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177265 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177266 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177279 | 0.88[CHD][hapmap];0.90[JPT][hapmap] |
| rs1177283 | 0.80[TSI][hapmap] |
| rs1177287 | 0.80[CHD][hapmap] |
| rs1177288 | 0.85[TSI][hapmap] |
| rs1177289 | 0.84[TSI][hapmap] |
| rs1177290 | 1.00[CEU][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1177293 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs1177295 | 0.81[CEU][hapmap] |
| rs1177298 | 0.81[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap] |
| rs1177300 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1186180 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1624206 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1624236 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1626783 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1627608 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1665257 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1665279 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1729657 | 0.81[CEU][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap] |
| rs2441463 | 0.81[EUR][1000 genomes] |
| rs2564097 | 0.80[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014