SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1177264	0.89[MKK][hapmap];0.82[TSI][hapmap]
rs1177265	0.80[TSI][hapmap]
rs1177282	0.85[JPT][hapmap]
rs1177284	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1177285	0.85[JPT][hapmap]
rs1177286	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1177287	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1177288	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1177289	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1177290	0.83[TSI][hapmap]
rs1177293	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1665263	0.88[JPT][hapmap]
rs1665278	0.80[TSI][hapmap]
rs1729660	0.85[JPT][hapmap]
rs71403390	0.87[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
KIAA1841	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 7)