SNP Report
Basic Infomation
| Name | rs1729660 dbSNP |
|---|---|
| Location | chr:2,61365812 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 68)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169662 | 0.83[CHD][hapmap];0.84[MEX][hapmap] |
| rs11498 | 0.94[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11685226 | 0.81[AMR][1000 genomes] |
| rs11688322 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1177271 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1177272 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1177273 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1177274 | 0.89[ASW][hapmap];0.98[LWK][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs1177275 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1177276 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1177277 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1177278 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1177282 | 0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1177283 | 0.85[JPT][hapmap] |
| rs1177284 | 0.89[JPT][hapmap] |
| rs1177285 | 0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1177287 | 0.81[JPT][hapmap] |
| rs1177288 | 0.81[JPT][hapmap] |
| rs1177302 | 0.83[AMR][1000 genomes] |
| rs1177303 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1177305 | 0.83[AMR][1000 genomes] |
| rs1177306 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1177307 | 0.85[AMR][1000 genomes] |
| rs1177308 | 0.85[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs1177309 | 0.82[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs12473277 | 0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12999245 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1615070 | 0.83[ASW][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs1665258 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1665259 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1665260 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1665261 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1665262 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1665263 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1729653 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1729654 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1729655 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1729656 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1729667 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1729671 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1729672 | 0.94[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap] |
| rs1729673 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1729674 | 0.85[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes] |
| rs2123112 | 0.88[CEU][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap] |
| rs2167564 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2441466 | 0.85[ASN][1000 genomes] |
| rs2441467 | 0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2592491 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2592493 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2592496 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2600668 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2600669 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs2600670 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2698194 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3213944 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34279970 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35341794 | 0.81[AMR][1000 genomes] |
| rs35507645 | 0.81[AMR][1000 genomes] |
| rs3889717 | 0.85[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4671397 | 0.84[CHB][hapmap];0.82[CHD][hapmap] |
| rs4672427 | 0.83[CHD][hapmap];0.86[MEX][hapmap] |
| rs60997156 | 0.81[AMR][1000 genomes] |
| rs6545846 | 0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap] |
| rs6737373 | 0.83[CHD][hapmap] |
| rs720201 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7558954 | 0.85[CEU][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs777584 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap] |
| rs777587 | 0.83[CHD][hapmap];0.90[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000212978 | Distal transcriptional regulation |
| C2orf74 | Distal transcriptional regulation |
| KIAA1841 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014