SNP Report
Basic Infomation
| Name | rs12473277 dbSNP |
|---|---|
| Location | chr:2,61358620 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11498 | 0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11688322 | 0.82[ASN][1000 genomes] |
| rs1177272 | 0.82[ASN][1000 genomes] |
| rs1177273 | 0.82[ASN][1000 genomes] |
| rs1177275 | 0.82[ASN][1000 genomes] |
| rs1177277 | 0.80[ASN][1000 genomes] |
| rs1177282 | 0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1177285 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1177303 | 0.94[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1177308 | 0.81[CHB][hapmap] |
| rs1177309 | 0.80[JPT][hapmap] |
| rs1615070 | 0.80[JPT][hapmap] |
| rs1665258 | 0.80[ASN][1000 genomes] |
| rs1665259 | 0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1665260 | 0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1665261 | 0.80[ASN][1000 genomes] |
| rs1665262 | 0.80[ASN][1000 genomes] |
| rs1665263 | 0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1729653 | 0.94[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1729654 | 0.82[ASN][1000 genomes] |
| rs1729656 | 0.81[ASN][1000 genomes] |
| rs1729660 | 0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1729671 | 0.94[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1729672 | 0.89[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1729673 | 0.94[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1729674 | 0.80[JPT][hapmap] |
| rs2167564 | 0.94[CHB][hapmap];0.81[JPT][hapmap] |
| rs2441466 | 0.91[ASN][1000 genomes] |
| rs2441467 | 0.88[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs2592491 | 0.85[ASN][1000 genomes] |
| rs2592493 | 0.94[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2600668 | 0.94[CHB][hapmap] |
| rs2698194 | 0.85[ASN][1000 genomes] |
| rs3213944 | 0.88[CHB][hapmap];0.80[JPT][hapmap] |
| rs34279970 | 0.82[ASN][1000 genomes] |
| rs4671397 | 0.89[CHB][hapmap];1.00[YRI][hapmap] |
| rs720201 | 0.94[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs777584 | 0.83[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014