SNP Report
Basic Infomation
| Name | rs777584 dbSNP |
|---|---|
| Location | chr:2,61410346 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169662 | 0.84[ASW][hapmap];0.84[CHB][hapmap];0.87[GIH][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap] |
| rs11498 | 0.84[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap] |
| rs11677775 | 0.82[YRI][hapmap] |
| rs11677776 | 0.81[JPT][hapmap] |
| rs1177285 | 0.84[ASW][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap] |
| rs1177303 | 0.89[CHB][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs1177306 | 0.81[ASN][1000 genomes] |
| rs1177309 | 0.86[GIH][hapmap];0.85[MEX][hapmap] |
| rs11886950 | 0.86[AFR][1000 genomes] |
| rs11897994 | 0.91[AFR][1000 genomes] |
| rs11903270 | 0.91[AFR][1000 genomes] |
| rs12473277 | 0.83[CHB][hapmap] |
| rs12999245 | 0.84[ASN][1000 genomes] |
| rs1615070 | 0.84[ASW][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap] |
| rs1665258 | 0.83[ASN][1000 genomes] |
| rs1665259 | 0.89[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs1665260 | 0.89[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs1665261 | 0.83[ASN][1000 genomes] |
| rs1665262 | 0.83[ASN][1000 genomes] |
| rs1665263 | 0.83[ASN][1000 genomes] |
| rs1729653 | 0.89[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs1729654 | 0.82[ASN][1000 genomes] |
| rs1729660 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap] |
| rs1729671 | 0.87[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs1729672 | 0.89[CHB][hapmap] |
| rs1729673 | 0.89[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs1729674 | 0.87[GIH][hapmap];0.86[MEX][hapmap] |
| rs2123112 | 0.83[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2167564 | 0.89[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2441467 | 0.82[CHB][hapmap] |
| rs2592493 | 0.80[CEU][hapmap];0.89[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs2600668 | 0.89[CHB][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2600670 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3213944 | 0.80[CEU][hapmap];0.82[CHB][hapmap] |
| rs3889717 | 0.87[GIH][hapmap];0.85[MEX][hapmap] |
| rs4671397 | 0.82[CHB][hapmap];0.81[CHD][hapmap] |
| rs4671403 | 0.80[YRI][hapmap] |
| rs4672427 | 0.87[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap] |
| rs6545846 | 0.81[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes] |
| rs6545855 | 0.84[CHB][hapmap];0.86[YRI][hapmap] |
| rs720201 | 0.83[ASW][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs72884963 | 0.89[AFR][1000 genomes] |
| rs7583383 | 0.86[YRI][hapmap] |
| rs777587 | 0.87[GIH][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs935860 | 0.90[YRI][hapmap];0.83[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Proximal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
| AHSA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014