SNP Report

Basic Infomation

Name	rs6545846 dbSNP
Location	chr:2,61442910
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 58)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169662	0.88[ASW][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.84[MEX][hapmap]
rs11498	0.95[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.80[ASN][1000 genomes]
rs11677775	0.90[JPT][hapmap];0.81[AFR][1000 genomes]
rs11677776	0.93[JPT][hapmap]
rs11688322	0.80[ASN][1000 genomes]
rs1177272	0.80[ASN][1000 genomes]
rs1177275	0.80[ASN][1000 genomes]
rs1177285	0.92[GIH][hapmap];0.90[MEX][hapmap]
rs1177303	0.95[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs1177306	0.84[ASN][1000 genomes]
rs1177308	0.80[JPT][hapmap]
rs1177309	0.89[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap]
rs11897994	0.81[AFR][1000 genomes]
rs11903270	0.81[AFR][1000 genomes]
rs12999245	0.86[ASN][1000 genomes]
rs1615070	0.92[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap]
rs1665258	0.85[ASN][1000 genomes]
rs1665259	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1665260	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1665261	0.85[ASN][1000 genomes]
rs1665262	0.85[ASN][1000 genomes]
rs1665263	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1729653	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1729654	0.83[ASN][1000 genomes]
rs1729655	0.80[ASN][1000 genomes]
rs1729660	0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs1729671	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1729673	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1729674	0.89[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap]
rs2005285	0.88[ASN][1000 genomes]
rs2123111	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2123112	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2167564	0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2441467	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2592493	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2600668	0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2600670	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3213944	0.84[JPT][hapmap]
rs3213951	0.84[JPT][hapmap]
rs34279970	0.80[ASN][1000 genomes]
rs3889717	0.89[GIH][hapmap];0.90[MEX][hapmap]
rs4671397	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4671403	0.90[JPT][hapmap]
rs4672424	0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4672427	0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap]
rs4672440	0.84[JPT][hapmap]
rs4672441	0.89[JPT][hapmap]
rs6545855	0.90[JPT][hapmap]
rs6737373	0.90[JPT][hapmap]
rs720201	0.95[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs7558954	0.80[JPT][hapmap]
rs7583383	0.89[JPT][hapmap]
rs777584	0.81[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs777587	0.95[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.83[AMR][1000 genomes]
rs777592	0.84[JPT][hapmap]
rs778153	0.90[JPT][hapmap]
rs811871	0.90[JPT][hapmap]
rs935860	0.90[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 10)

eQTL related gene	Source
C2orf74	seeQTL
LOC339804	Pritchard
AHSA2	SCAN
AHSA2	SCAN
FANCL	SCAN
LOC339803	SCAN
C2orf74	SCAN
C2orf74	SCAN
LOC339803	SCAN
C2orf74	GTEx