SNP Report

Basic Infomation

Name	rs11897994 dbSNP
Location	chr:2,61399529
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169482	0.81[ASN][1000 genomes]
rs11685226	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1177272	0.80[AMR][1000 genomes]
rs1177302	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1177303	0.84[AMR][1000 genomes]
rs1177305	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1177306	0.83[AMR][1000 genomes]
rs1177307	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1177308	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1177309	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11886950	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11903270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12999245	0.83[AMR][1000 genomes]
rs14170	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1615070	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1665258	0.81[AMR][1000 genomes]
rs1665259	0.81[AMR][1000 genomes]
rs1665260	0.81[AMR][1000 genomes]
rs1665261	0.81[AMR][1000 genomes]
rs1665262	0.81[AMR][1000 genomes]
rs1665263	0.81[AMR][1000 genomes]
rs1729655	0.80[AMR][1000 genomes]
rs1729671	0.81[AMR][1000 genomes]
rs1729673	0.83[AMR][1000 genomes]
rs1729674	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2123111	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2167564	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2420811	0.81[ASN][1000 genomes]
rs2592493	0.81[AMR][1000 genomes]
rs2592496	0.80[AMR][1000 genomes]
rs2600668	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2600669	0.99[ASN][1000 genomes]
rs2600670	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35015708	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35341794	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35507645	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3889717	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4672424	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55908966	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60997156	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6545846	0.81[AFR][1000 genomes]
rs72884963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7558954	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs777584	0.91[AFR][1000 genomes]
rs777587	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs935860	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
AHSA2	Distal transcriptional regulation
KIAA1841	Distal transcriptional regulation
C2orf74	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)