SNP Report
Name | rs11897994   dbSNP |
---|---|
Location | chr:2,61399529 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10169482 | 0.81[ASN][1000 genomes] |
rs11685226 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1177272 | 0.80[AMR][1000 genomes] |
rs1177302 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1177303 | 0.84[AMR][1000 genomes] |
rs1177305 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1177306 | 0.83[AMR][1000 genomes] |
rs1177307 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1177308 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1177309 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11886950 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11903270 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12999245 | 0.83[AMR][1000 genomes] |
rs14170 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1615070 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1665258 | 0.81[AMR][1000 genomes] |
rs1665259 | 0.81[AMR][1000 genomes] |
rs1665260 | 0.81[AMR][1000 genomes] |
rs1665261 | 0.81[AMR][1000 genomes] |
rs1665262 | 0.81[AMR][1000 genomes] |
rs1665263 | 0.81[AMR][1000 genomes] |
rs1729655 | 0.80[AMR][1000 genomes] |
rs1729671 | 0.81[AMR][1000 genomes] |
rs1729673 | 0.83[AMR][1000 genomes] |
rs1729674 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2123111 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs2167564 | 0.99[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs2420811 | 0.81[ASN][1000 genomes] |
rs2592493 | 0.81[AMR][1000 genomes] |
rs2592496 | 0.80[AMR][1000 genomes] |
rs2600668 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs2600669 | 0.99[ASN][1000 genomes] |
rs2600670 | 0.99[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs35015708 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs35341794 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs35507645 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3889717 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4672424 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs55908966 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs60997156 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6545846 | 0.81[AFR][1000 genomes] |
rs72884963 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7558954 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs777584 | 0.91[AFR][1000 genomes] |
rs777587 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs935860 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
AHSA2 | Distal transcriptional regulation |
KIAA1841 | Distal transcriptional regulation |
C2orf74 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014