SNP Report
Basic Infomation
| Name | rs2600669 dbSNP |
|---|---|
| Location | chr:2,61401296 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 55)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169482 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10169662 | 0.85[CHB][hapmap] |
| rs11498 | 0.90[JPT][hapmap] |
| rs11677775 | 0.85[CHB][hapmap] |
| rs11677776 | 0.84[CHB][hapmap] |
| rs11685226 | 0.99[ASN][1000 genomes] |
| rs1177282 | 0.86[JPT][hapmap] |
| rs1177285 | 0.85[JPT][hapmap] |
| rs1177302 | 0.87[ASN][1000 genomes] |
| rs1177303 | 0.90[JPT][hapmap] |
| rs1177305 | 0.87[ASN][1000 genomes] |
| rs1177307 | 0.88[ASN][1000 genomes] |
| rs1177308 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1177309 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs11886950 | 0.97[ASN][1000 genomes] |
| rs11897994 | 0.99[ASN][1000 genomes] |
| rs11903270 | 0.99[ASN][1000 genomes] |
| rs14170 | 0.91[ASN][1000 genomes] |
| rs1615070 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1665259 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs1665260 | 0.80[CHB][hapmap];0.90[JPT][hapmap] |
| rs1665263 | 0.89[JPT][hapmap] |
| rs1729653 | 0.80[CHB][hapmap];0.90[JPT][hapmap] |
| rs1729660 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs1729671 | 0.90[JPT][hapmap] |
| rs1729673 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs1729674 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2123111 | 0.85[ASN][1000 genomes] |
| rs2167564 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs2420811 | 0.81[ASN][1000 genomes] |
| rs2441467 | 0.94[JPT][hapmap] |
| rs2592493 | 0.80[CHB][hapmap];0.90[JPT][hapmap] |
| rs2600668 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs3213944 | 0.90[JPT][hapmap] |
| rs35015708 | 0.90[ASN][1000 genomes] |
| rs35341794 | 0.96[ASN][1000 genomes] |
| rs35507645 | 0.97[ASN][1000 genomes] |
| rs3856521 | 0.90[AFR][1000 genomes] |
| rs3889717 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4672424 | 0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4672427 | 0.80[CHB][hapmap] |
| rs55908966 | 0.90[ASN][1000 genomes] |
| rs60997156 | 0.96[ASN][1000 genomes] |
| rs6545855 | 0.85[CHB][hapmap] |
| rs6737373 | 0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes] |
| rs6741734 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs68020555 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs720201 | 0.85[JPT][hapmap] |
| rs72884963 | 0.98[ASN][1000 genomes] |
| rs7558954 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs7583383 | 0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes] |
| rs777587 | 0.84[ASN][1000 genomes] |
| rs777592 | 0.80[CHB][hapmap] |
| rs935860 | 0.85[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs9653547 | 0.90[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Proximal transcriptional regulation |
| KIAA1841 | Distal transcriptional regulation |
| C2orf74 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014