SNP Report
Basic Infomation
| Name | rs7583383 dbSNP |
|---|---|
| Location | chr:2,61500322 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169482 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10169662 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11677775 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11677776 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1177308 | 0.90[CHB][hapmap] |
| rs1177309 | 0.84[CHB][hapmap] |
| rs12617371 | 0.81[ASN][1000 genomes] |
| rs1615070 | 0.84[CHB][hapmap] |
| rs1729674 | 0.84[CHB][hapmap] |
| rs2005285 | 0.83[AMR][1000 genomes] |
| rs2084318 | 1.00[JPT][hapmap] |
| rs2123112 | 0.83[JPT][hapmap] |
| rs2167564 | 0.93[YRI][hapmap] |
| rs2442025 | 0.84[ASN][1000 genomes] |
| rs2600668 | 0.90[YRI][hapmap] |
| rs2600669 | 0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes] |
| rs3213951 | 0.89[JPT][hapmap] |
| rs34668697 | 0.84[ASN][1000 genomes] |
| rs3889717 | 0.84[CHB][hapmap] |
| rs4671397 | 0.89[JPT][hapmap] |
| rs4671403 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4672424 | 0.90[CHB][hapmap];0.94[JPT][hapmap] |
| rs4672427 | 0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs4672440 | 0.90[JPT][hapmap] |
| rs4672441 | 0.89[JPT][hapmap] |
| rs6545846 | 0.89[JPT][hapmap] |
| rs6545850 | 0.93[ASN][1000 genomes] |
| rs6545855 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6545868 | 0.84[JPT][hapmap] |
| rs6737373 | 0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs68020555 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7558954 | 0.84[CHB][hapmap] |
| rs777584 | 0.86[YRI][hapmap] |
| rs777587 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs777592 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
| rs778153 | 1.00[JPT][hapmap];0.83[YRI][hapmap] |
| rs811871 | 1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs935860 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014