SNP Report
Name | rs2084318   dbSNP |
---|---|
Location | chr:2,61652601 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10169662 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs10865324 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11125883 | 0.91[CHB][hapmap] |
rs11677775 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs11677776 | 1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes] |
rs11691734 | 0.93[YRI][hapmap] |
rs1186696 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs12616433 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12617371 | 0.91[ASN][1000 genomes] |
rs12713438 | 0.82[YRI][hapmap] |
rs13028833 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1867838 | 0.88[EUR][1000 genomes] |
rs1880866 | 0.90[YRI][hapmap] |
rs2421192 | 0.82[YRI][hapmap] |
rs2421196 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2421200 | 0.82[EUR][1000 genomes] |
rs2442025 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2442037 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2518934 | 0.82[YRI][hapmap] |
rs2694627 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2922089 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3213951 | 0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs34668697 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4671403 | 1.00[JPT][hapmap];0.93[YRI][hapmap] |
rs4672427 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
rs4672440 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
rs4672441 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6545850 | 0.84[ASN][1000 genomes] |
rs6545855 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6545868 | 0.84[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6545883 | 0.93[YRI][hapmap] |
rs6708277 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6737373 | 1.00[JPT][hapmap] |
rs7563678 | 0.86[YRI][hapmap] |
rs7583383 | 1.00[JPT][hapmap] |
rs7584500 | 0.90[EUR][1000 genomes] |
rs7587389 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs778139 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs778150 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs778153 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs778753 | 0.90[YRI][hapmap] |
rs778755 | 0.89[YRI][hapmap] |
rs778764 | 0.84[YRI][hapmap] |
rs811871 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
USP34 | Distal transcriptional regulation |
ENSG00000234624 | Distal transcriptional regulation |
SNORA70B | Distal transcriptional regulation |
XPO1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014