SNP Report
Basic Infomation
| Name | rs2084318 dbSNP |
|---|---|
| Location | chr:2,61652601 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169662 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10865324 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11125883 | 0.91[CHB][hapmap] |
| rs11677775 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11677776 | 1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs11691734 | 0.93[YRI][hapmap] |
| rs1186696 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12616433 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12617371 | 0.91[ASN][1000 genomes] |
| rs12713438 | 0.82[YRI][hapmap] |
| rs13028833 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1867838 | 0.88[EUR][1000 genomes] |
| rs1880866 | 0.90[YRI][hapmap] |
| rs2421192 | 0.82[YRI][hapmap] |
| rs2421196 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2421200 | 0.82[EUR][1000 genomes] |
| rs2442025 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2442037 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2518934 | 0.82[YRI][hapmap] |
| rs2694627 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2922089 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3213951 | 0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs34668697 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4671403 | 1.00[JPT][hapmap];0.93[YRI][hapmap] |
| rs4672427 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs4672440 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4672441 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6545850 | 0.84[ASN][1000 genomes] |
| rs6545855 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6545868 | 0.84[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6545883 | 0.93[YRI][hapmap] |
| rs6708277 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6737373 | 1.00[JPT][hapmap] |
| rs7563678 | 0.86[YRI][hapmap] |
| rs7583383 | 1.00[JPT][hapmap] |
| rs7584500 | 0.90[EUR][1000 genomes] |
| rs7587389 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs778139 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs778150 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs778153 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs778753 | 0.90[YRI][hapmap] |
| rs778755 | 0.89[YRI][hapmap] |
| rs778764 | 0.84[YRI][hapmap] |
| rs811871 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
| ENSG00000234624 | Distal transcriptional regulation |
| SNORA70B | Distal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014