SNP Report

Basic Infomation

Name	rs11691734 dbSNP
Location	chr:2,61702466
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 89)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10173974	0.83[EUR][1000 genomes]
rs10186325	0.88[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs10496092	0.92[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap]
rs11125885	0.83[EUR][1000 genomes]
rs11677776	0.81[YRI][hapmap]
rs11678419	0.86[EUR][1000 genomes]
rs1186697	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1186710	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1186711	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11887205	0.82[CEU][hapmap];0.98[GIH][hapmap];0.92[TSI][hapmap]
rs12473030	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12478038	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12612677	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12612982	0.83[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs12617911	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12620105	0.88[CEU][hapmap]
rs12713436	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12713437	0.83[CEU][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12713438	0.89[ASW][hapmap];0.88[CEU][hapmap];0.80[CHD][hapmap];0.98[GIH][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13003376	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13413337	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1562308	0.88[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs1867839	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1880866	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900572	0.96[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2084195	0.81[EUR][1000 genomes]
rs2084318	0.93[YRI][hapmap]
rs2121660	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2252662	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2264100	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2305155	0.88[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2305156	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2421192	0.96[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2421203	0.96[CEU][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2463102	0.88[CEU][hapmap]
rs2518934	0.81[TSI][hapmap]
rs2592352	0.95[CEU][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2593625	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2593626	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2593633	0.88[CEU][hapmap];0.95[TSI][hapmap]
rs2694617	0.88[CEU][hapmap]
rs2694625	0.96[CEU][hapmap]
rs2694635	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2694642	0.88[CEU][hapmap];0.82[GIH][hapmap];0.90[TSI][hapmap]
rs2694653	0.80[EUR][1000 genomes]
rs35085112	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs3732170	0.83[EUR][1000 genomes]
rs3732171	0.84[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs3771260	0.88[CEU][hapmap]
rs3771261	0.88[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs3821222	0.92[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4430924	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4671403	0.86[YRI][hapmap]
rs4672445	0.86[EUR][1000 genomes]
rs6545867	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6545868	0.92[YRI][hapmap]
rs6545871	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545872	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6545873	0.84[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6545877	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6545883	0.88[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap]
rs6705235	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6707830	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6709112	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6718887	0.86[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6734830	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7421663	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7557230	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7561229	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7563678	0.84[ASW][hapmap];0.84[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7566035	0.81[CEU][hapmap]
rs7574631	0.91[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs7578139	0.88[CEU][hapmap]
rs7588814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7591345	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7606167	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs766447	0.88[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778143	0.87[CEU][hapmap];0.88[TSI][hapmap]
rs778144	0.88[CEU][hapmap];0.82[GIH][hapmap];0.90[TSI][hapmap]
rs778152	0.88[CEU][hapmap]
rs778154	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs778155	0.96[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs778752	0.84[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap]
rs778753	0.82[YRI][hapmap]
rs778755	0.85[GIH][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap]
rs778758	0.88[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs9807965	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9989775	0.82[EUR][1000 genomes]
rs9989864	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation
XPO1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
C2orf74	seeQTL
MDH1	SCAN
BCL11A	SCAN
LOC339803	SCAN
XPO1	SCAN
AHSA2	SCAN
LOC339803	SCAN