SNP Report

Basic Infomation

Name	rs4671403 dbSNP
Location	chr:2,61511452
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169482	0.82[ASN][1000 genomes]
rs10169662	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865324	0.82[AMR][1000 genomes]
rs11677775	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11677776	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11691734	0.86[YRI][hapmap]
rs1177308	0.85[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1177309	0.81[CEU][hapmap]
rs12617371	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1729674	0.85[CEU][hapmap]
rs1880866	0.84[YRI][hapmap]
rs2084318	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2123111	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2123112	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs2442025	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2694627	0.80[AMR][1000 genomes]
rs2922089	0.82[AMR][1000 genomes]
rs3213951	0.90[JPT][hapmap]
rs34668697	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3889717	0.85[CEU][hapmap]
rs4671397	0.84[JPT][hapmap]
rs4672424	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs4672427	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4672440	0.90[JPT][hapmap]
rs4672441	0.90[JPT][hapmap]
rs6545846	0.90[JPT][hapmap]
rs6545850	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6545855	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6545868	0.95[CEU][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs6708277	0.80[AMR][1000 genomes]
rs6737373	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs68020555	0.82[ASN][1000 genomes]
rs7558954	0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7583383	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs777584	0.80[YRI][hapmap]
rs777587	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs777592	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs778139	0.96[CEU][hapmap]
rs778153	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs811871	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs935860	0.94[CHB][hapmap];0.90[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
LOC339804	Pritchard
LOC339804	Pritchard
C2orf74	GTEx