SNP Report
Basic Infomation
| Name | rs778139 dbSNP |
|---|---|
| Location | chr:2,61684564 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169662 | 0.96[CEU][hapmap];0.97[GIH][hapmap] |
| rs10865324 | 0.95[EUR][1000 genomes] |
| rs11677775 | 0.92[CEU][hapmap] |
| rs11677776 | 0.92[CEU][hapmap] |
| rs1186696 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12616433 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13028833 | 0.94[EUR][1000 genomes] |
| rs1867838 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2084318 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2421196 | 0.88[EUR][1000 genomes] |
| rs2421200 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2442037 | 0.90[EUR][1000 genomes] |
| rs2694627 | 0.88[EUR][1000 genomes] |
| rs2922089 | 0.94[EUR][1000 genomes] |
| rs3213951 | 0.84[JPT][hapmap] |
| rs4671403 | 0.96[CEU][hapmap] |
| rs4672440 | 0.84[JPT][hapmap] |
| rs6545855 | 0.92[CEU][hapmap] |
| rs6545868 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6708277 | 0.94[EUR][1000 genomes] |
| rs7584500 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7587389 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs778138 | 0.84[ASN][1000 genomes] |
| rs778153 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs778755 | 0.82[ASW][hapmap] |
| rs811871 | 0.96[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014