SNP Report
Basic Infomation
| Name | rs12616433 dbSNP |
|---|---|
| Location | chr:2,61696488 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10865324 | 0.89[EUR][1000 genomes] |
| rs1186696 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13028833 | 0.91[EUR][1000 genomes] |
| rs1867838 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2084318 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2421196 | 0.85[EUR][1000 genomes] |
| rs2421200 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2442037 | 0.86[EUR][1000 genomes] |
| rs2694627 | 0.85[EUR][1000 genomes] |
| rs2922089 | 0.90[EUR][1000 genomes] |
| rs6545868 | 0.87[EUR][1000 genomes] |
| rs6708277 | 0.90[EUR][1000 genomes] |
| rs7584500 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7587389 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs778139 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs778153 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000234624 | Distal transcriptional regulation |
| SNORA70B | Distal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014