SNP Report
Name | rs6545868   dbSNP |
---|---|
Location | chr:2,61655365 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10169662 | 0.95[CEU][hapmap];0.83[JPT][hapmap] |
rs10865324 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs11677775 | 0.95[CEU][hapmap];0.84[JPT][hapmap] |
rs11677776 | 0.95[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap] |
rs11691734 | 0.92[YRI][hapmap] |
rs1186696 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12616433 | 0.87[EUR][1000 genomes] |
rs12713438 | 0.81[YRI][hapmap] |
rs13028833 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1867838 | 0.85[EUR][1000 genomes] |
rs1880866 | 0.90[YRI][hapmap] |
rs2084318 | 0.84[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2421192 | 0.81[YRI][hapmap] |
rs2421196 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2442037 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2518934 | 0.81[YRI][hapmap] |
rs2694627 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2922089 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs3213951 | 0.83[JPT][hapmap] |
rs4671403 | 0.95[CEU][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap] |
rs4672427 | 0.90[CEU][hapmap];0.84[JPT][hapmap] |
rs4672440 | 0.84[JPT][hapmap] |
rs4672441 | 0.82[JPT][hapmap] |
rs6545855 | 0.95[CEU][hapmap];0.84[JPT][hapmap] |
rs6545883 | 0.92[YRI][hapmap] |
rs6708277 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6737373 | 0.84[JPT][hapmap] |
rs7563678 | 0.85[YRI][hapmap] |
rs7583383 | 0.84[JPT][hapmap] |
rs7584500 | 0.87[EUR][1000 genomes] |
rs7587389 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs778139 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs778150 | 0.81[AMR][1000 genomes] |
rs778153 | 0.95[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs778753 | 0.89[YRI][hapmap] |
rs778755 | 0.88[YRI][hapmap] |
rs778764 | 0.83[YRI][hapmap] |
rs811871 | 0.95[CEU][hapmap];0.84[JPT][hapmap] |
Symbol | Regulation type |
---|---|
USP34 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
LOC339804 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014