SNP Report

Basic Infomation

Name	rs6545868 dbSNP
Location	chr:2,61655365
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169662	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs10865324	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11677775	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs11677776	0.95[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs11691734	0.92[YRI][hapmap]
rs1186696	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12616433	0.87[EUR][1000 genomes]
rs12713438	0.81[YRI][hapmap]
rs13028833	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1867838	0.85[EUR][1000 genomes]
rs1880866	0.90[YRI][hapmap]
rs2084318	0.84[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421192	0.81[YRI][hapmap]
rs2421196	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2442037	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2518934	0.81[YRI][hapmap]
rs2694627	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2922089	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3213951	0.83[JPT][hapmap]
rs4671403	0.95[CEU][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs4672427	0.90[CEU][hapmap];0.84[JPT][hapmap]
rs4672440	0.84[JPT][hapmap]
rs4672441	0.82[JPT][hapmap]
rs6545855	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs6545883	0.92[YRI][hapmap]
rs6708277	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6737373	0.84[JPT][hapmap]
rs7563678	0.85[YRI][hapmap]
rs7583383	0.84[JPT][hapmap]
rs7584500	0.87[EUR][1000 genomes]
rs7587389	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs778139	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778150	0.81[AMR][1000 genomes]
rs778153	0.95[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs778753	0.89[YRI][hapmap]
rs778755	0.88[YRI][hapmap]
rs778764	0.83[YRI][hapmap]
rs811871	0.95[CEU][hapmap];0.84[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)