SNP Report

Basic Infomation

Name	rs778753 dbSNP
Location	chr:2,61780200
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10186325	0.88[CEU][hapmap]
rs11691734	0.82[YRI][hapmap]
rs11887205	0.87[CEU][hapmap]
rs12612982	0.84[CEU][hapmap]
rs12713437	0.81[CEU][hapmap]
rs12713438	0.88[CEU][hapmap]
rs1562308	0.88[CEU][hapmap]
rs1880866	0.81[YRI][hapmap]
rs1900572	0.81[CEU][hapmap]
rs2084318	0.90[YRI][hapmap]
rs2305155	0.88[CEU][hapmap]
rs2305156	0.82[CEU][hapmap]
rs2421203	0.81[CEU][hapmap]
rs2427884	0.81[AFR][1000 genomes]
rs2518934	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2592350	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3087898	0.84[ASN][1000 genomes]
rs3732171	0.85[CEU][hapmap]
rs3771260	0.82[CEU][hapmap]
rs3771261	0.88[CEU][hapmap]
rs6545868	0.89[YRI][hapmap]
rs6545873	0.85[CEU][hapmap]
rs6545883	0.88[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs6545888	0.81[CEU][hapmap]
rs6718887	0.81[CEU][hapmap]
rs7421663	0.82[CEU][hapmap]
rs7561252	0.80[AMR][1000 genomes]
rs7563678	0.85[CEU][hapmap];0.83[YRI][hapmap]
rs7574631	0.84[CEU][hapmap]
rs766447	0.88[CEU][hapmap]
rs778155	0.81[CEU][hapmap]
rs778752	0.85[CEU][hapmap]
rs778755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778756	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778757	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs778758	0.88[CEU][hapmap]
rs778760	0.88[ASN][1000 genomes]
rs778764	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000266768	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)