SNP Report
Basic Infomation
| Name | rs2518934 dbSNP |
|---|---|
| Location | chr:2,61794498 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10186325 | 0.86[TSI][hapmap] |
| rs11691734 | 0.81[TSI][hapmap] |
| rs11887205 | 0.82[GIH][hapmap];0.88[TSI][hapmap] |
| rs12612982 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs12614390 | 0.84[ASN][1000 genomes] |
| rs12713437 | 0.81[TSI][hapmap] |
| rs12713438 | 0.86[TSI][hapmap] |
| rs1562308 | 0.82[GIH][hapmap];0.88[TSI][hapmap] |
| rs1900572 | 0.81[TSI][hapmap] |
| rs2084318 | 0.82[YRI][hapmap] |
| rs2305155 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs2421203 | 0.81[TSI][hapmap] |
| rs2592350 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34471744 | 0.91[ASN][1000 genomes] |
| rs3732171 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs3771261 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs3821222 | 0.82[GIH][hapmap];0.81[TSI][hapmap] |
| rs4430924 | 0.82[GIH][hapmap];0.81[TSI][hapmap] |
| rs6545868 | 0.81[YRI][hapmap] |
| rs6545873 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs6545883 | 0.82[GIH][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap] |
| rs6545887 | 0.88[CEU][hapmap] |
| rs6545888 | 0.92[CEU][hapmap] |
| rs7561252 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7563678 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs7574631 | 0.88[CEU][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap] |
| rs766447 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs778155 | 0.81[TSI][hapmap] |
| rs778752 | 0.82[GIH][hapmap];0.88[TSI][hapmap] |
| rs778753 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs778755 | 0.88[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs778756 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs778757 | 0.86[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap] |
| rs778758 | 0.82[GIH][hapmap];0.88[TSI][hapmap] |
| rs778764 | 0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| XPO1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014