SNP Report
Basic Infomation
| Name | rs12713437 dbSNP |
|---|---|
| Location | chr:2,61722904 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 93)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10173974 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10186325 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10496092 | 0.86[GIH][hapmap] |
| rs11125885 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11678419 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11691734 | 0.83[CEU][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1186697 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1186708 | 0.87[ASN][1000 genomes] |
| rs1186710 | 0.83[EUR][1000 genomes] |
| rs1186711 | 0.83[EUR][1000 genomes] |
| rs11887205 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.90[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs12473030 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12478038 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12612677 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12612982 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12617911 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12713436 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12713438 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13003376 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13413337 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1562308 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs1562309 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1867839 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1880866 | 0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1900572 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs2084195 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2121660 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2252662 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2264100 | 0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2305155 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2305156 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2421192 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2421203 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2421207 | 0.82[AMR][1000 genomes] |
| rs2441380 | 0.83[AMR][1000 genomes] |
| rs2518934 | 0.81[TSI][hapmap] |
| rs2592352 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2593625 | 0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2593626 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2593633 | 0.83[GIH][hapmap];0.84[TSI][hapmap] |
| rs2694625 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap] |
| rs2694635 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2694642 | 0.86[GIH][hapmap] |
| rs2694653 | 0.80[ASN][1000 genomes] |
| rs2921718 | 0.81[AMR][1000 genomes] |
| rs3732170 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3732171 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3771258 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3771260 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3771261 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3821222 | 1.00[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4430924 | 0.83[CEU][hapmap];0.98[GIH][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4672445 | 0.82[ASN][1000 genomes] |
| rs6545867 | 0.87[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6545871 | 0.87[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6545872 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6545873 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6545877 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6545883 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes] |
| rs6545887 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap] |
| rs6545888 | 0.93[ASW][hapmap] |
| rs6705235 | 0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6706139 | 0.80[ASN][1000 genomes] |
| rs6707830 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6709112 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6718887 | 0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6734830 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6742276 | 0.83[AMR][1000 genomes] |
| rs7421663 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7557230 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7561229 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7563678 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7574631 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap] |
| rs7588814 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7591345 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7606167 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs766447 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs778143 | 0.82[CEU][hapmap];0.84[GIH][hapmap] |
| rs778144 | 0.86[GIH][hapmap] |
| rs778154 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap] |
| rs778155 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap] |
| rs778752 | 1.00[ASW][hapmap];0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs778753 | 0.81[CEU][hapmap] |
| rs778755 | 0.83[CEU][hapmap];0.84[GIH][hapmap];0.85[TSI][hapmap] |
| rs778758 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs778762 | 0.83[AMR][1000 genomes] |
| rs778763 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs778764 | 0.81[CEU][hapmap] |
| rs9309336 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9309337 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs9807965 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9989775 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9989864 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| XPO1 | Proximal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014