SNP Report
Basic Infomation
| Name | rs6545867 dbSNP |
|---|---|
| Location | chr:2,61651027 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 83)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10186325 | 0.92[CEU][hapmap];0.81[JPT][hapmap] |
| rs10496092 | 0.91[CEU][hapmap] |
| rs11678419 | 0.81[ASN][1000 genomes] |
| rs11691734 | 0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1186697 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1186708 | 0.96[ASN][1000 genomes] |
| rs1186710 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1186711 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11887205 | 0.86[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs12473030 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12478038 | 0.84[EUR][1000 genomes] |
| rs12612677 | 0.82[ASN][1000 genomes] |
| rs12612982 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap] |
| rs12617911 | 0.83[ASN][1000 genomes] |
| rs12620105 | 0.92[CEU][hapmap];0.86[JPT][hapmap] |
| rs12713436 | 0.91[EUR][1000 genomes] |
| rs12713437 | 0.87[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12713438 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13003376 | 0.90[EUR][1000 genomes] |
| rs13023037 | 0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1562308 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs1867839 | 0.88[EUR][1000 genomes] |
| rs1880866 | 0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1900572 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2121660 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2167566 | 0.82[CEU][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap] |
| rs2252662 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2264100 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2305155 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2305156 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2421192 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2421203 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2442034 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2463102 | 0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap] |
| rs2592352 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2593625 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2593626 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2593633 | 0.92[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap] |
| rs2694617 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap] |
| rs2694625 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2694635 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2694642 | 0.92[CEU][hapmap];0.85[JPT][hapmap] |
| rs2694653 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2950268 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35085112 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3732171 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs3771260 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs3771261 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs3821222 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4430924 | 0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4672429 | 0.81[JPT][hapmap] |
| rs4672445 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6545871 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6545872 | 0.83[ASN][1000 genomes] |
| rs6545873 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6545877 | 0.83[ASN][1000 genomes] |
| rs6545883 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs6545887 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs6705235 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6709112 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6718887 | 0.91[CEU][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6734830 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6739427 | 0.87[CEU][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap] |
| rs7421663 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs7557230 | 0.83[ASN][1000 genomes] |
| rs7561229 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7563678 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7566035 | 0.86[CEU][hapmap];0.80[JPT][hapmap] |
| rs7574631 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs7578139 | 0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7588814 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7591345 | 0.82[ASN][1000 genomes] |
| rs7606167 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs766447 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs778143 | 0.91[CEU][hapmap];0.81[JPT][hapmap] |
| rs778144 | 0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs778152 | 0.92[CEU][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs778154 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs778155 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs778752 | 0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs778758 | 0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs9309336 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs9309337 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014