SNP Report

Basic Infomation

Name	rs7566035 dbSNP
Location	chr:2,61520815
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10496092	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125871	0.82[AMR][1000 genomes]
rs11125872	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11691734	0.81[CEU][hapmap]
rs12053388	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615222	0.98[ASN][1000 genomes]
rs12620105	0.95[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12997538	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12998475	0.85[AFR][1000 genomes]
rs1621048	0.88[YRI][hapmap]
rs1729658	0.88[YRI][hapmap]
rs1729662	0.83[YRI][hapmap]
rs1809028	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1880866	0.82[CEU][hapmap]
rs1900572	0.85[CEU][hapmap]
rs2060824	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2121660	0.86[CEU][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs2167566	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290324	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs2421116	0.91[ASN][1000 genomes]
rs2421192	0.86[CEU][hapmap]
rs2421203	0.85[CEU][hapmap]
rs2463102	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2592352	0.83[CEU][hapmap]
rs2593633	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2600665	0.85[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2694617	0.95[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2694625	0.86[CEU][hapmap];0.94[YRI][hapmap]
rs2694642	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28480287	0.87[ASN][1000 genomes]
rs4430924	0.81[CEU][hapmap]
rs4671401	0.89[JPT][hapmap]
rs4671402	0.92[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4672423	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4672425	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4672429	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs4672431	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62152270	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6545845	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6545847	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6545867	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs6545871	0.86[CEU][hapmap]
rs6705235	0.81[CEU][hapmap]
rs6706786	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6709441	0.90[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6734628	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6738482	0.98[ASN][1000 genomes]
rs6739427	0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs6749226	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7570707	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7578139	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs777585	0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs777589	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs777590	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs777591	0.85[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs777593	0.86[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs778143	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778144	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778152	0.95[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778154	0.86[CEU][hapmap]
rs778155	0.85[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs811372	1.00[CHB][hapmap];0.84[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)