SNP Report

Basic Infomation

Name	rs6545871 dbSNP
Location	chr:2,61692203
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 89)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10173974	0.82[EUR][1000 genomes]
rs10186325	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10496092	0.91[CEU][hapmap]
rs11125885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11678419	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11691734	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1186697	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1186710	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1186711	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887205	0.86[CEU][hapmap];0.84[YRI][hapmap]
rs12473030	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12478038	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12612677	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12612982	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12617911	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12620105	0.92[CEU][hapmap]
rs12713436	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12713437	0.87[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12713438	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13003376	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13023037	0.82[EUR][1000 genomes]
rs13413337	0.82[EUR][1000 genomes]
rs1562308	0.92[CEU][hapmap];0.92[YRI][hapmap]
rs1867839	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1880866	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1900572	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1971183	0.81[AMR][1000 genomes]
rs2121660	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2167566	0.82[CEU][hapmap]
rs2252662	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2264100	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2305155	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2305156	0.92[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2421192	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2421203	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2442034	0.83[EUR][1000 genomes]
rs2463102	0.92[CEU][hapmap]
rs2592352	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2593625	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2593626	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2593633	0.92[CEU][hapmap]
rs2694617	0.92[CEU][hapmap]
rs2694625	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2694635	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2694642	0.92[CEU][hapmap]
rs2694653	0.84[EUR][1000 genomes]
rs2950268	0.83[EUR][1000 genomes]
rs35085112	0.84[EUR][1000 genomes]
rs3732170	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3732171	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs3771258	0.82[AMR][1000 genomes]
rs3771260	0.92[CEU][hapmap]
rs3771261	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs3821222	0.96[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4430924	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4672445	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6545867	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6545872	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6545873	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6545877	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6545883	0.92[CEU][hapmap]
rs6545887	0.82[CEU][hapmap]
rs6705235	0.96[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6707830	0.82[EUR][1000 genomes]
rs6709112	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6718887	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6734830	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7421663	0.92[CEU][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7557230	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7561229	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7563678	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7566035	0.86[CEU][hapmap]
rs7574631	0.81[CEU][hapmap]
rs7578139	0.92[CEU][hapmap]
rs7588814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7591345	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7606167	0.88[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs766447	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778143	0.91[CEU][hapmap]
rs778144	0.92[CEU][hapmap]
rs778152	0.92[CEU][hapmap]
rs778154	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778155	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs778752	0.87[CEU][hapmap];0.89[YRI][hapmap]
rs778758	0.92[CEU][hapmap];0.92[YRI][hapmap]
rs9309336	0.82[AMR][1000 genomes]
rs9807965	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9989775	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9989864	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SNORA70B	Distal transcriptional regulation
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)