SNP Report

Basic Infomation

Name	rs13023037 dbSNP
Location	chr:2,61620989
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1186697	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1186708	0.86[ASN][1000 genomes]
rs1186710	0.87[EUR][1000 genomes]
rs1186711	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11887205	0.83[JPT][hapmap]
rs12713436	0.82[EUR][1000 genomes]
rs12713438	0.83[JPT][hapmap]
rs13003376	0.81[EUR][1000 genomes]
rs1562308	0.83[JPT][hapmap]
rs1880866	0.81[EUR][1000 genomes]
rs1900572	0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2121660	0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2252662	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2264100	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2305155	0.83[JPT][hapmap]
rs2305156	0.84[JPT][hapmap]
rs2421192	0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421203	0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2442034	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2463102	0.81[EUR][1000 genomes]
rs2592352	0.89[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2593625	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2593626	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2593633	0.81[EUR][1000 genomes]
rs2694625	0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2694635	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2694653	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2950268	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35085112	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732171	0.83[JPT][hapmap]
rs3771260	0.84[JPT][hapmap]
rs3771261	0.83[JPT][hapmap]
rs3821222	0.83[JPT][hapmap]
rs4672445	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6545867	0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6545871	0.82[EUR][1000 genomes]
rs6545873	0.83[JPT][hapmap]
rs6545883	0.83[JPT][hapmap]
rs6705235	0.84[JPT][hapmap]
rs7421663	0.84[JPT][hapmap]
rs7563678	0.83[JPT][hapmap]
rs7588814	0.82[EUR][1000 genomes]
rs7606167	0.84[JPT][hapmap]
rs766447	0.83[JPT][hapmap]
rs778143	0.80[EUR][1000 genomes]
rs778152	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778154	0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778155	0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778752	0.83[JPT][hapmap]
rs778758	0.89[JPT][hapmap]
rs9309336	0.84[JPT][hapmap]
rs9309337	0.84[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)