SNP Report

Basic Infomation

Name	rs2593625 dbSNP
Location	chr:2,61668769
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11678419	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11691734	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1186697	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1186708	0.96[ASN][1000 genomes]
rs1186710	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1186711	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12473030	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12478038	0.84[EUR][1000 genomes]
rs12612677	0.83[ASN][1000 genomes]
rs12617911	0.84[ASN][1000 genomes]
rs12713436	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12713437	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12713438	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13003376	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13023037	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1867839	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1880866	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1900572	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2121660	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252662	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2264100	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305155	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2305156	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2421192	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421203	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442034	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2592352	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2593626	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2694625	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2694635	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2694653	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2950268	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35085112	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3821222	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4430924	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4672445	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545867	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6545871	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6545872	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6545873	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6545877	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6705235	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6709112	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6718887	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6734830	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7557230	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7561229	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7563678	0.82[ASN][1000 genomes]
rs7588814	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7591345	0.83[ASN][1000 genomes]
rs7606167	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs766447	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778154	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778155	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9807965	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)