SNP Report

Basic Infomation

Name	rs12620105 dbSNP
Location	chr:2,61512321
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	0.88[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10496092	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11125871	0.82[AMR][1000 genomes]
rs11125872	0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11691734	0.88[CEU][hapmap]
rs12053388	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12615222	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12997538	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12998475	0.82[AFR][1000 genomes]
rs1621048	0.90[YRI][hapmap]
rs1729658	0.90[YRI][hapmap]
rs1729662	0.86[YRI][hapmap]
rs1809028	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1880866	0.89[CEU][hapmap]
rs1900572	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs2060824	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2121660	0.92[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs2167566	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2290324	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2421116	0.88[ASN][1000 genomes]
rs2421192	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2421203	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs2463102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2592352	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs2593633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2600665	0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs2694617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2694625	0.92[CEU][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap]
rs2694642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28480287	0.85[ASN][1000 genomes]
rs4430924	0.88[CEU][hapmap]
rs4671401	0.90[JPT][hapmap]
rs4671402	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4672423	0.81[EUR][1000 genomes]
rs4672425	0.82[AFR][1000 genomes]
rs4672429	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4672431	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62152270	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6545845	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6545847	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6545867	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs6545871	0.92[CEU][hapmap]
rs6706786	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6709441	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6734628	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6738482	0.94[ASN][1000 genomes]
rs6739427	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6749226	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7566035	0.95[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7570707	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7578139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs777585	0.83[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs777588	0.81[JPT][hapmap]
rs777589	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs777590	0.88[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs777591	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs777593	0.88[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs778143	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778144	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778152	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778154	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs778155	0.92[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs811372	0.90[CHB][hapmap];0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)