SNP Report
Basic Infomation
| Name | rs28480287 dbSNP |
|---|---|
| Location | chr:2,61489289 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10496092 | 0.87[ASN][1000 genomes] |
| rs12053388 | 0.87[ASN][1000 genomes] |
| rs12615222 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12620105 | 0.85[ASN][1000 genomes] |
| rs1809028 | 0.81[ASN][1000 genomes] |
| rs2167566 | 0.87[ASN][1000 genomes] |
| rs2290324 | 0.85[EUR][1000 genomes] |
| rs2421116 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2600665 | 0.81[ASN][1000 genomes] |
| rs2694617 | 0.81[ASN][1000 genomes] |
| rs4671402 | 0.81[ASN][1000 genomes] |
| rs4672429 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4672431 | 0.87[ASN][1000 genomes] |
| rs62152270 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6738482 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6749226 | 0.88[ASN][1000 genomes] |
| rs7566035 | 0.87[ASN][1000 genomes] |
| rs777585 | 0.81[ASN][1000 genomes] |
| rs777589 | 0.82[ASN][1000 genomes] |
| rs777593 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014