SNP Report
Basic Infomation
| Name | rs2290324 dbSNP |
|---|---|
| Location | chr:2,61448776 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10178135 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10496092 | 0.81[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11125872 | 0.86[CHB][hapmap];0.85[JPT][hapmap] |
| rs12053388 | 0.84[ASN][1000 genomes] |
| rs12615222 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12620105 | 0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1729662 | 0.83[CHD][hapmap] |
| rs1809028 | 0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2060824 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2167566 | 0.86[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2421116 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2593633 | 0.92[CHD][hapmap] |
| rs2600665 | 0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2694617 | 0.84[JPT][hapmap] |
| rs2694642 | 0.92[CHD][hapmap];0.84[JPT][hapmap] |
| rs2698197 | 0.84[JPT][hapmap] |
| rs28480287 | 0.85[EUR][1000 genomes] |
| rs3087777 | 0.88[ASN][1000 genomes] |
| rs4671401 | 0.81[CEU][hapmap];0.85[JPT][hapmap] |
| rs4671402 | 0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap] |
| rs4672423 | 0.96[ASN][1000 genomes] |
| rs4672425 | 0.93[ASN][1000 genomes] |
| rs4672429 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4672431 | 0.84[ASN][1000 genomes] |
| rs62152270 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6545845 | 0.98[ASN][1000 genomes] |
| rs6545847 | 0.81[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6706786 | 0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6709441 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6734628 | 0.98[ASN][1000 genomes] |
| rs6738482 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6739427 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs6749226 | 0.82[ASN][1000 genomes] |
| rs73932693 | 0.81[AFR][1000 genomes] |
| rs7566035 | 0.83[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7570707 | 0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs777585 | 0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs777588 | 0.95[JPT][hapmap] |
| rs777589 | 0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs777590 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs777591 | 0.81[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs777593 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs778143 | 0.92[CHD][hapmap] |
| rs778144 | 0.90[CHD][hapmap] |
| rs778155 | 0.83[CHD][hapmap] |
| rs811372 | 0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 17)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014