SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10178135	0.88[AMR][1000 genomes]
rs10496092	0.90[JPT][hapmap]
rs11125871	0.89[AFR][1000 genomes]
rs11125872	0.86[JPT][hapmap]
rs12615222	0.82[AFR][1000 genomes]
rs12620105	0.90[JPT][hapmap]
rs1809028	0.90[JPT][hapmap]
rs2060824	0.90[JPT][hapmap]
rs2167566	0.95[JPT][hapmap]
rs2290324	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2421116	0.87[AMR][1000 genomes]
rs2463102	0.86[JPT][hapmap]
rs2593633	0.85[JPT][hapmap]
rs2600665	0.85[JPT][hapmap];0.91[YRI][hapmap]
rs2694617	0.90[JPT][hapmap]
rs2694642	0.90[JPT][hapmap]
rs2698197	0.81[JPT][hapmap]
rs4671402	0.90[JPT][hapmap]
rs4672429	0.82[CEU][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs6545847	0.90[JPT][hapmap]
rs6706786	0.90[JPT][hapmap]
rs6709441	0.95[JPT][hapmap]
rs6739427	0.85[JPT][hapmap]
rs7566035	0.89[JPT][hapmap]
rs7570707	0.84[JPT][hapmap]
rs7578139	0.86[JPT][hapmap]
rs777585	0.85[JPT][hapmap]
rs777588	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs777589	0.85[JPT][hapmap]
rs777590	0.90[JPT][hapmap]
rs777591	0.90[JPT][hapmap]
rs777593	0.85[JPT][hapmap]
rs778143	0.85[JPT][hapmap]
rs778144	0.85[JPT][hapmap]
rs778152	0.84[JPT][hapmap]
rs811372	0.85[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Proximal transcriptional regulation
USP34	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)